The IRS requires e-filing if your accounting firm is filing more than 10 information returns.. It is the default method of filing returns. And since most accounting firms have to file for different clients, multi-client 1099 filing software becomes essential.
The best 1099 software for accounting firms should be able to handle multiple EINs, validate TINs, allow role-based access, and keep audit trails clear.
The 1099 e-file solutions listed here are designed for scale, speed, and compliance. These tools enable teams to stay on top of 1099 due dates and penalties for firms during the busy filing season.
Who Will Benefit From This List?
- Accounting firms, CPA practices, CAS teams, and service providers.
- Firms that want a single workflow.
- Teams that need role-based access
- Businesses looking for a unified platform
What to Look for in 1099 Software?
Here are some essential features that 1099 e-file solutions for firms should have:
- Bulk uploads: Support for CSV/Excel, connectors, or APIs to handle high-volume data.
- TIN matching: Prevent mismatches and reduce penalties with IRS verification.
- State filing support: CF/SF plus direct state filing if and when required.
- Quick corrections: Amend errors fast with tracked versions.
- Integrations: Connect with QuickBooks, Xero, NetSuite, or Sage.
- Security: SOC 2, encryption, MFA, and role-based access.
- Ease of use: Intuitive dashboards, multi-client views, and responsive support.
- Pricing fit: Scales with volume, with add-ons for print/mail or APIs.
The Top 7 1099 Software for Accounting Firms
1. Tax1099.com
With over a decade of experience, this IRS-authorized e-filing and compliance platform has been offering 1099 e-filing services for SMBs, accountants, and enterprises. The platform supports a wide range of 1099 forms, direct e-file to IRS/SSA, state filing, recipient e-delivery/print-and-mail, TIN matching, bulk uploads, and integrations.
Best For
It is the right choice for medium to large accounting and CPA firms and businesses that require comprehensive form coverage and validation tools.
Key Features
- Supports 1099s, W-2s, 1095s, and more for federal and state compliance
- Bulk data uploads and integration with multiple accounting software
- Built-in TIN matching, address checks, and duplicate detection
- Role-based access controls for multi-user management
- 1099 state filing support via CF/SF and direct state e-file
- Multi-client Filing Dashboard to manage all client forms from a centralized interface
- Recipient consent collection and delivery through e-portal, plus print and mail option
- Correction workflows with detailed reporting
Why firms should choose Tax1099
- Strong compliance checks, like real-time TIN and address validation
- Multiple ways to deliver recipient copies (online + offline)
- Robust reporting that helps with audits and client summaries.
Pricing:
Tax1099 offers tier-based pricing depending on how many forms your firm wants to e-file.
- 1000+ forms: Custom pricing
- 501 to 1000 forms: $0.68 each
- 151 to 500 forms: $1.31 per form
- 21 to 150 forms: $2.30 per form
- First 20 forms: $2.99 per form
2. 1099Online.com
1099Online is a fast, secure, and affordable 1099 e-filing service. It offers a simple 3-step 1099 e-filing workflow for most 1099 types (1099-NEC, 1099-MISC, 1099-K, 1099-DIV, etc.). It also provides features like bulk import, TIN matching, and state filing support for a more seamless filing process.
Best For
This multi-client 1099 filing software is ideal for small to mid-sized accounting firms seeking an easy-to-use and affordable 1099 filing.
Key Features
- Manage multiple EINs with role-based access and activity logs
- Bulk uploads via CSV/Excel with reusable mappings
- TIN matching, duplicate checks, and flag errors
- Federal e-file plus 1099 state filing support (CF/SF)
- Deliver recipient copies via print/mail
- Correction workflow with alerts and tracking
Why firms should choose 1099Online
- Offers a straightforward and budget-friendly workflow
- Excellent for 1099 pre-filing data validations
Pricing
1099Online offers a tier-based pricing model. It is one of the most affordable e-filing platforms currently.
- 1000+ forms: $0.69 per form
- 151-1000 forms: $1.25 per form
- 41-150 forms: $1.99 per form
- 11-50 forms: $2.49 per form
- 1-10 forms: $3.49 per form
3. Avalara 1099 (Track1099)
Avalara 1099 & W-9 is an IRS-approved online solution for 1099 and W-9 compliance. It gives accounting firms more control over their end-to-end e-filing workflow, from collecting W-9s, TIN matching, importing and managing payee data and e-filing to the IRS and states to delivering recipient copies electronically or by mail.
Best For
Firms that require strong integrations with cloud accounting and a more robust e-delivery/portal experience.
Key Features
- Works with QuickBooks, Xero, NetSuite, and Bill.com
- REST API access with built-in TIN matching
- Covers CF/SF along with separate state filings
- Recipient portal, with optional USPS mailing
Why firms should choose Avalara 1099 & W-2
- Fits nicely into varied client tech stacks
- Smooth imports from popular accounting tools
- Strong compliance features for accurate 1099 reporting
Cons
- A higher-priced version is needed to use advanced features
- API integrations may require engineering support
Pricing:
Avalara 1099 & W-2 offers two types of pricing: pay-as-you-go model for smaller filings and an annual subscription model for enterprise customers.
1. Pay-as-you-go pricing-
– $0.63 per form: 501 forms and above
– $1.30 per form: 166 to 500 forms
– $2.30 per form: 16 to 165 forms
– $3.10 per form: 1 to 15 forms
2. For Annual subscription: Contact the Avalara Team
4. Yearli by Greatland
Yearli by Greatland is another 1099 software that offers an all-in-one filing workflow for accounting firms. It handles federal e-filing, direct state filing, and recipient delivery by email and mail.
Best For
Accounting firms that want clear plan tiers and a path to scale from smaller to larger client volumes.
Key Features
- Three tier plans (Core, Performance, Premier) for different filing needs
- TIN matching is included in higher plans
- API access available with Premier
- Imports from leading accounting platforms
- USPS print-and-mail options
Why should firms choose Yearli by Greatland
- Easy to start and scale as filing needs grow
- Clear workflow for firms handling larger client volumes
- Backed by a well-known vendor in tax reporting
Cons
- Advanced tools only come with higher-priced plans
- Costs can rise as you scale into larger tiers
Pricing:
Yearly by Greatland offers three models of pricing designed to fit your budget and business needs.
1. Core Pricing: $6.39
2. Performance Pricing:
– $2.34: 1001+ forms
– $3.08: 501+ forms
– $3.66: 251+ forms
– $4.06: 101+ forms
– -$4.92: 51+ forms
$6.64: 1+ forms
3. Premier Pricing:
– $1.82: 50,001+ forms
– $2.00: 10,001+ forms
– $2.17: 5001+ forms
– $2.35: 2,501+ forms
– $2.46: 1+ forms
5. 1099Pro
1099Pro is a 1099 cloud e-filing platform. Alongside its 1099 online e-filing service, it also offers Windows desktop software and an optional Service Bureau for outsourcing printing, mailing, and e-delivery of forms.
Best For
1099 filers that require stricter IT/security.
Key Features
- Either desktop or cloud-based setup
- Offers SOAP/REST APIs to integrate with other systems
- Service bureau model available for high-volume filing
- Stores data longer with full logs for tracking
Why should firms choose 1099Pro
- Works well for firms with strict IT and security needs
- Built to manage large and complex 1099 programs
- Strong audit trails and retention features
Cons
- Desktop or hybrid models may need IT planning
- Setup can be heavier compared to other SaaS-only solutions
Pricing:
Similar to other 1099 eFiling platforms, 1099Pro also offers a tier-based pricing model.
- E-file only: Starting at $499/Year
- E-File + Print & Mail: Starting at $684/Year
- E-File, Print & Mail + eDelivery: Starting at $714/Year
- Enterprise: Custom Pricing
6. TaxBandits
TaxBandits is an IRS-authorized, SOC 2–certified e-file provider that lets firms file 1099s online with federal and state support, corrections, and recipient copy distribution. Besides 1099s, the platform also covers other forms like W-2, 94x, 1095, W-9, BOIR, and more, and offers both a web app and a robust API for embedding e-filing in other software.
Best For
Teams that are managing multiple entities/EINs and mixed bookkeeping stacks
Key Features
- Dashboard supports multiple businesses and EINs
- Uploads via OAuth APIs, SFTP, or CSV
- Comprehensive state filing and corrections tools
- Print/mail service plus recipient portal
Why should firms choose TaxBandit
- Works with different client bookkeeping setups
- Clear visibility for managing multiple entities
- Scales smoothly as filing volumes grow
Cons
- Initial workflow configuration may be complicated.
Pricing:
TaxBandits offers a tier-based pricing model for their 1099 e-filing service.
- $0.80: 501-1000 forms
- $1.00: 251-500 forms
- $1.15: 101-250 forms
- $1.75: 11-100 forms
- $2.75: 1-10 forms
7. Drake Software
Drake Software is a comprehensive and professional 1099 form preparation software used by 70,000+ tax professionals. It is designed to efficiently prepare, manage, and e-file a wide range of tax forms including 1099 forms.
Best For
Firms already on Drake seeking integrated W-2/1099 workflows within a familiar desktop environment.
Key Features
- Imports W-2, 1099, and client data directly from Drake
- Preload previous year information
- Embedded data integrity checks
- Reporting and export options
Pros
- Seamless for practices already using Drake
- Easy for small-to-mid client loads
- User-friendly desktop environment
Cons
- Designed for desktop
- Lack of multi-state filing workflow
- Limited API/SFTP features
Pricing:
Drake Software provides three types of pricing depending on your firm’s needs.
1. Drake Tax Pro:
- Multi-User: $2,695
- Single-User: $2,345
2. Drake Tax 1040:
- Multi-User: $2,145
- Single-User: $1,945
3. Pay-Per-Return (PPR): Starting at $359.99 for 10 individual returns
FAQs
1. Can one firm account handle multiple client EINs?
Yes, most 1099 e-filing platforms can manage and handle filing for multiple EINs with role-based permissions and activity logs.
2. How do top tools handle state filing (CF/SF vs. direct)?
The best 1099 software for accounting firms like 1099Online or Tax1099, e-files federal forms and forwards returns to states participating in the CF/SF program. For states not in CF/SF, it submits directly to the state agency.
3. What validation features help reduce rejects?
Validation features such as TIN/name check, USPS address verification, detection of redundant data, and pre-file error alerts help reduce rejects.
4. How are recipient copies sent and tracked?
Most platforms offer encrypted electronic delivery portals, along with optional print or mail options. They also track e-consent and provide an audit trail to confirm delivery.
5. What security and compliance standards should a firm expect?
Look for SOC 2 compliance (Type II preferred), data encryption during transfer and storage, MFA/SSO, IP restrictions, role-specific permissions, and audit logs that the firm can manage and export.
Conclusion
The best 1099 software for accounting firms helps manage multiple filings, validate TINs/EINs, collect high volumes of data (through W-9), and allow integration with different accounting software & provide API for faster and easy filings.